Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col6a6Q8C6K9 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Gm18889-201ENSMUST00000174284 929 ntBASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Gm25948-201ENSMUST00000175334 112 ntBASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Gm19164-201ENSMUST00000210667 640 ntBASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Gm43338-201ENSMUST00000198617 2223 ntBASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a6Q8C6K9 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Rpph1-201ENSMUST00000175096 319 ntBASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a6Q8C6K9 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Gm6018-201ENSMUST00000216090 1306 ntBASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col6a6Q8C6K9 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms