Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Usp40Q8BWR4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Gm10499-201ENSMUST00000174094 934 ntBASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Usp40Q8BWR4 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Usp40Q8BWR4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gm14701-201ENSMUST00000117156 348 ntBASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gm12008-201ENSMUST00000117791 755 ntBASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gm13365-201ENSMUST00000121188 973 ntBASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Mir1895-201ENSMUST00000122615 79 ntBASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gm8396-201ENSMUST00000057361 823 ntBASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Usp40Q8BWR4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Gm9385-201ENSMUST00000117563 472 ntBASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Usp40Q8BWR4 AC130669.1-201ENSMUST00000228537 1672 ntBASIC21.33■■□□□ 1
Usp40Q8BWR4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Usp40Q8BWR4 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Usp40Q8BWR4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Usp40Q8BWR4 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC21.32■■□□□ 1
Usp40Q8BWR4 Gm7901-201ENSMUST00000120430 1597 ntBASIC21.32■■□□□ 1
Usp40Q8BWR4 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Usp40Q8BWR4 Gm16198-201ENSMUST00000118766 670 ntBASIC21.32■■□□□ 1
Usp40Q8BWR4 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC21.32■■□□□ 1
Usp40Q8BWR4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms