Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm13597-201ENSMUST00000121239 375 ntBASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm24513-201ENSMUST00000174964 138 ntBASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm8318-201ENSMUST00000182954 872 ntBASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm27397-201ENSMUST00000184997 107 ntBASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ddx58Q6Q899 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Ndufaf2-202ENSMUST00000223734 556 ntBASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ddx58Q6Q899 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Gm11453-201ENSMUST00000117318 1007 ntBASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ddx58Q6Q899 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Gm43575-201ENSMUST00000196420 516 ntBASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ddx58Q6Q899 AC157650.3-201ENSMUST00000225058 1476 ntBASIC19.27■□□□□ 0.67
Ddx58Q6Q899 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.27■□□□□ 0.67
Ddx58Q6Q899 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ddx58Q6Q899 AC119177.1-201ENSMUST00000227647 1332 ntBASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms