Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp49Q6P9L4 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp49Q6P9L4 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC17.52■□□□□ 0.4
Usp49Q6P9L4 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.52■□□□□ 0.4
Usp49Q6P9L4 Gm18622-201ENSMUST00000219361 595 ntBASIC17.52■□□□□ 0.4
Usp49Q6P9L4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp49Q6P9L4 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp49Q6P9L4 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp49Q6P9L4 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp49Q6P9L4 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Gm12644-201ENSMUST00000119935 606 ntBASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Usp49Q6P9L4 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.48■□□□□ 0.39
Usp49Q6P9L4 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp49Q6P9L4 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms