Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.24■□□□□ 0.51
Rnf180Q3U827 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm9797-201ENSMUST00000052902 613 ntBASIC18.24■□□□□ 0.51
Rnf180Q3U827 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm8096-201ENSMUST00000209921 1591 ntBASIC18.24■□□□□ 0.51
Rnf180Q3U827 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.24■□□□□ 0.51
Rnf180Q3U827 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.24■□□□□ 0.51
Rnf180Q3U827 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Gm37466-201ENSMUST00000195692 652 ntBASIC18.23■□□□□ 0.51
Rnf180Q3U827 Gm9728-201ENSMUST00000200197 1055 ntBASIC18.23■□□□□ 0.51
Rnf180Q3U827 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rnf180Q3U827 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.23■□□□□ 0.51
Rnf180Q3U827 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Gm18222-201ENSMUST00000202416 1387 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Mir1897-201ENSMUST00000122581 272 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Gm28911-201ENSMUST00000188837 117 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 AC159747.1-201ENSMUST00000219903 265 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 AC162801.1-201ENSMUST00000220612 198 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 CT009510.1-201ENSMUST00000227972 270 ntBASIC18.22■□□□□ 0.51
Rnf180Q3U827 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Rnf180Q3U827 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Dupd1-202ENSMUST00000224735 548 ntBASIC18.21■□□□□ 0.51
Rnf180Q3U827 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf180Q3U827 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
Rnf180Q3U827 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm15236-201ENSMUST00000117309 379 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm45784-201ENSMUST00000188360 142 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm5356-201ENSMUST00000093326 615 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.2■□□□□ 0.5
Rnf180Q3U827 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf180Q3U827 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms