Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Gm28033-201ENSMUST00000184224 96 ntBASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Gm29518-201ENSMUST00000190858 372 ntBASIC15.21■□□□□ 0.03
Col28a1Q2UY11 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col28a1Q2UY11 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col28a1Q2UY11 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col28a1Q2UY11 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col28a1Q2UY11 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
Col28a1Q2UY11 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col28a1Q2UY11 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Gm9013-201ENSMUST00000132939 882 ntBASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col28a1Q2UY11 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Spsb2-203ENSMUST00000112473 1322 ntBASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Mir1668-201ENSMUST00000184114 107 ntBASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Gm17807-201ENSMUST00000186869 298 ntBASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col28a1Q2UY11 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col28a1Q2UY11 Gm15442-201ENSMUST00000117905 1527 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms