Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.51■□□□□ 0.23
Shmt1P50431 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Shmt1P50431 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Shmt1P50431 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC16.51■□□□□ 0.23
Shmt1P50431 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Shmt1P50431 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Shmt1P50431 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Shmt1P50431 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Shmt1P50431 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC16.5■□□□□ 0.23
Shmt1P50431 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Shmt1P50431 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Shmt1P50431 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC16.5■□□□□ 0.23
Shmt1P50431 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.5■□□□□ 0.23
Shmt1P50431 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.5■□□□□ 0.23
Shmt1P50431 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Prob1-201ENSMUST00000097619 3021 ntBASIC16.5■□□□□ 0.23
Shmt1P50431 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Shmt1P50431 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Shmt1P50431 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Shmt1P50431 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.49■□□□□ 0.23
Shmt1P50431 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.49■□□□□ 0.23
Shmt1P50431 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.49■□□□□ 0.23
Shmt1P50431 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.49■□□□□ 0.23
Shmt1P50431 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.49■□□□□ 0.23
Shmt1P50431 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.49■□□□□ 0.23
Shmt1P50431 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.49■□□□□ 0.23
Shmt1P50431 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.49■□□□□ 0.23
Shmt1P50431 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.49■□□□□ 0.23
Shmt1P50431 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.49■□□□□ 0.23
Shmt1P50431 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Shmt1P50431 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Shmt1P50431 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Shmt1P50431 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.48■□□□□ 0.23
Shmt1P50431 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.48■□□□□ 0.23
Shmt1P50431 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.48■□□□□ 0.23
Shmt1P50431 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.48■□□□□ 0.23
Shmt1P50431 AC132104.2-201ENSMUST00000215011 266 ntBASIC16.48■□□□□ 0.23
Shmt1P50431 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.48■□□□□ 0.23
Shmt1P50431 Gm5364-201ENSMUST00000216789 889 ntBASIC16.48■□□□□ 0.23
Shmt1P50431 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Shmt1P50431 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Shmt1P50431 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Shmt1P50431 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.48■□□□□ 0.23
Shmt1P50431 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.48■□□□□ 0.23
Shmt1P50431 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.48■□□□□ 0.23
Shmt1P50431 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Shmt1P50431 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Shmt1P50431 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.47■□□□□ 0.23
Shmt1P50431 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms