Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ercc3P49135 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Gm7862-201ENSMUST00000121461 292 ntBASIC18.54■□□□□ 0.56
Ercc3P49135 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ercc3P49135 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.54■□□□□ 0.56
Ercc3P49135 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Gm15173-201ENSMUST00000122049 433 ntBASIC18.53■□□□□ 0.56
Ercc3P49135 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Ercc3P49135 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.53■□□□□ 0.56
Ercc3P49135 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.53■□□□□ 0.56
Ercc3P49135 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.53■□□□□ 0.56
Ercc3P49135 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.53■□□□□ 0.56
Ercc3P49135 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.53■□□□□ 0.56
Ercc3P49135 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Ercc3P49135 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.53■□□□□ 0.56
Ercc3P49135 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ercc3P49135 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC18.52■□□□□ 0.56
Ercc3P49135 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Gm25990-201ENSMUST00000102440 86 ntBASIC18.52■□□□□ 0.56
Ercc3P49135 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.52■□□□□ 0.56
Ercc3P49135 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.52■□□□□ 0.56
Ercc3P49135 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.52■□□□□ 0.56
Ercc3P49135 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ercc3P49135 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Ercc3P49135 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ercc3P49135 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ercc3P49135 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Ercc3P49135 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC18.51■□□□□ 0.55
Ercc3P49135 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Gm27646-201ENSMUST00000183989 110 ntBASIC18.51■□□□□ 0.55
Ercc3P49135 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ercc3P49135 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Ercc3P49135 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ercc3P49135 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
Ercc3P49135 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.5■□□□□ 0.55
Ercc3P49135 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ercc3P49135 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms