Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RaraP11416 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RaraP11416 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
RaraP11416 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Gm13312-201ENSMUST00000119631 718 ntBASIC16.92■□□□□ 0.3
RaraP11416 Gm25406-201ENSMUST00000157599 105 ntBASIC16.92■□□□□ 0.3
RaraP11416 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.92■□□□□ 0.3
RaraP11416 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
RaraP11416 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RaraP11416 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RaraP11416 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.91■□□□□ 0.3
RaraP11416 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RaraP11416 Gm25016-201ENSMUST00000158399 131 ntBASIC16.91■□□□□ 0.3
RaraP11416 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.91■□□□□ 0.3
RaraP11416 Gm23634-201ENSMUST00000175071 91 ntBASIC16.91■□□□□ 0.3
RaraP11416 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.91■□□□□ 0.3
RaraP11416 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.91■□□□□ 0.3
RaraP11416 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Sybu-209ENSMUST00000228639 4113 ntBASIC16.91■□□□□ 0.3
RaraP11416 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.91■□□□□ 0.3
RaraP11416 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RaraP11416 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RaraP11416 Olfr129-201ENSMUST00000122318 993 ntBASIC16.9■□□□□ 0.3
RaraP11416 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC16.9■□□□□ 0.3
RaraP11416 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.9■□□□□ 0.3
RaraP11416 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.9■□□□□ 0.3
RaraP11416 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RaraP11416 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RaraP11416 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.9■□□□□ 0.3
RaraP11416 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.89■□□□□ 0.3
RaraP11416 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
RaraP11416 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RaraP11416 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RaraP11416 Gm6659-201ENSMUST00000174752 547 ntBASIC16.89■□□□□ 0.29
RaraP11416 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
RaraP11416 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RaraP11416 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RaraP11416 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RaraP11416 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
RaraP11416 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RaraP11416 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RaraP11416 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RaraP11416 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms