Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
ClppO88696 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC15.25■□□□□ 0.03
ClppO88696 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.25■□□□□ 0.03
ClppO88696 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC15.25■□□□□ 0.03
ClppO88696 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.25■□□□□ 0.03
ClppO88696 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.25■□□□□ 0.03
ClppO88696 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ClppO88696 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ClppO88696 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ClppO88696 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ClppO88696 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Gm1401-201ENSMUST00000122048 772 ntBASIC15.24■□□□□ 0.03
ClppO88696 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
ClppO88696 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC15.24■□□□□ 0.03
ClppO88696 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC15.24■□□□□ 0.03
ClppO88696 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC15.24■□□□□ 0.03
ClppO88696 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
ClppO88696 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
ClppO88696 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
ClppO88696 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
ClppO88696 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Mypopos-202ENSMUST00000205975 2321 ntBASIC15.23■□□□□ 0.03
ClppO88696 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ClppO88696 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ClppO88696 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Asic1-205ENSMUST00000228185 1818 ntBASIC15.23■□□□□ 0.03
ClppO88696 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC15.23■□□□□ 0.03
ClppO88696 Gm7230-201ENSMUST00000173026 815 ntBASIC15.23■□□□□ 0.03
ClppO88696 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.23■□□□□ 0.03
ClppO88696 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Vti1a-206ENSMUST00000225529 1244 ntBASIC15.23■□□□□ 0.03
ClppO88696 AC154757.1-201ENSMUST00000228289 336 ntBASIC15.23■□□□□ 0.03
ClppO88696 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ClppO88696 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ClppO88696 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ClppO88696 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Gm5837-201ENSMUST00000191844 1369 ntBASIC15.23■□□□□ 0.03
ClppO88696 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ClppO88696 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ClppO88696 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ClppO88696 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Gm25990-201ENSMUST00000102440 86 ntBASIC15.22■□□□□ 0.03
ClppO88696 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ClppO88696 Gm12350-201ENSMUST00000121208 462 ntBASIC15.22■□□□□ 0.03
ClppO88696 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.22■□□□□ 0.03
ClppO88696 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms