Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Actl10-202ENSMUST00000226583 1501 ntBASIC12.99□□□□□ -0.33
Hmgb3O54879 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Gm5297-201ENSMUST00000198555 1171 ntBASIC12.99□□□□□ -0.33
Hmgb3O54879 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC12.99□□□□□ -0.33
Hmgb3O54879 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Ap5m1-205ENSMUST00000227431 3757 ntBASIC12.99□□□□□ -0.33
Hmgb3O54879 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Slc35b2-202ENSMUST00000223987 1766 ntBASIC12.99□□□□□ -0.33
Hmgb3O54879 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Hmgb3O54879 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Gm45133-201ENSMUST00000207548 2773 ntBASIC12.98□□□□□ -0.33
Hmgb3O54879 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Nrn1-203ENSMUST00000223611 1443 ntBASIC12.98□□□□□ -0.33
Hmgb3O54879 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Gm12933-201ENSMUST00000120203 872 ntBASIC12.98□□□□□ -0.33
Hmgb3O54879 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC12.98□□□□□ -0.33
Hmgb3O54879 H2-K2-201ENSMUST00000174250 1049 ntBASIC12.98□□□□□ -0.33
Hmgb3O54879 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Hmgb3O54879 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Gm43352-201ENSMUST00000196419 3065 ntBASIC12.98□□□□□ -0.33
Hmgb3O54879 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hmgb3O54879 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Hmgb3O54879 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hmgb3O54879 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Hmgb3O54879 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Hmgb3O54879 Gm14464-201ENSMUST00000119658 1254 ntBASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms