Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Rprl3-201ENSMUST00000157400 290 ntBASIC17.53■□□□□ 0.4
Smc1aQ9CU62 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smc1aQ9CU62 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Gm18421-201ENSMUST00000204122 625 ntBASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smc1aQ9CU62 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Smc1aQ9CU62 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
Smc1aQ9CU62 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.5■□□□□ 0.39
Smc1aQ9CU62 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Rps4l-201ENSMUST00000071745 943 ntBASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smc1aQ9CU62 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Gm13312-201ENSMUST00000119631 718 ntBASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Smc1aQ9CU62 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms