Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Gm7935-201ENSMUST00000100555 1278 ntBASIC15.28■□□□□ 0.04
Msh4Q99MT2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.28■□□□□ 0.04
Msh4Q99MT2 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.28■□□□□ 0.04
Msh4Q99MT2 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Msh4Q99MT2 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.27■□□□□ 0.04
Msh4Q99MT2 Gm44616-201ENSMUST00000206417 1732 ntBASIC15.27■□□□□ 0.04
Msh4Q99MT2 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC15.27■□□□□ 0.04
Msh4Q99MT2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC15.27■□□□□ 0.04
Msh4Q99MT2 AC114585.2-202ENSMUST00000228094 426 ntBASIC15.27■□□□□ 0.04
Msh4Q99MT2 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Msh4Q99MT2 Birc2-201ENSMUST00000054878 378 ntBASIC15.27■□□□□ 0.04
Msh4Q99MT2 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msh4Q99MT2 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Gm44454-201ENSMUST00000198541 138 ntBASIC15.26■□□□□ 0.03
Msh4Q99MT2 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC15.26■□□□□ 0.03
Msh4Q99MT2 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msh4Q99MT2 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms