Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Gm10253-201ENSMUST00000194270 940 ntBASIC16.48■□□□□ 0.23
Clp1Q99LI9 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clp1Q99LI9 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.47■□□□□ 0.23
Clp1Q99LI9 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clp1Q99LI9 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.47■□□□□ 0.23
Clp1Q99LI9 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm25287-201ENSMUST00000103846 110 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm22918-201ENSMUST00000103855 110 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm27430-201ENSMUST00000184585 107 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm44333-201ENSMUST00000197168 107 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm7774-201ENSMUST00000200064 533 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.46■□□□□ 0.23
Clp1Q99LI9 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clp1Q99LI9 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.45■□□□□ 0.22
Clp1Q99LI9 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.45■□□□□ 0.22
Clp1Q99LI9 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clp1Q99LI9 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Clp1Q99LI9 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clp1Q99LI9 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms