Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Cln3Q61124 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.11■□□□□ 0.33
Cln3Q61124 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cln3Q61124 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cln3Q61124 Gm10499-201ENSMUST00000174094 934 ntBASIC17.11■□□□□ 0.33
Cln3Q61124 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.11■□□□□ 0.33
Cln3Q61124 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17.11■□□□□ 0.33
Cln3Q61124 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cln3Q61124 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 AC025913.2-201ENSMUST00000220136 1766 ntBASIC17.1■□□□□ 0.33
Cln3Q61124 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Cln3Q61124 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cln3Q61124 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.1■□□□□ 0.33
Cln3Q61124 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.1■□□□□ 0.33
Cln3Q61124 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.1■□□□□ 0.33
Cln3Q61124 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 AC160980.1-201ENSMUST00000224136 970 ntBASIC17.1■□□□□ 0.33
Cln3Q61124 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.1■□□□□ 0.33
Cln3Q61124 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Cln3Q61124 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.1■□□□□ 0.33
Cln3Q61124 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Cln3Q61124 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cln3Q61124 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cln3Q61124 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cln3Q61124 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Cln3Q61124 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Cln3Q61124 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
Cln3Q61124 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cln3Q61124 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Gm27321-201ENSMUST00000185021 205 ntBASIC17.09■□□□□ 0.33
Cln3Q61124 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.09■□□□□ 0.33
Cln3Q61124 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.09■□□□□ 0.33
Cln3Q61124 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cln3Q61124 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cln3Q61124 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Cln3Q61124 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cln3Q61124 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Cln3Q61124 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.08■□□□□ 0.33
Cln3Q61124 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cln3Q61124 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.08■□□□□ 0.33
Cln3Q61124 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.08■□□□□ 0.32
Cln3Q61124 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Cln3Q61124 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Cln3Q61124 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.08■□□□□ 0.32
Cln3Q61124 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.08■□□□□ 0.32
Cln3Q61124 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.08■□□□□ 0.32
Cln3Q61124 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.08■□□□□ 0.32
Cln3Q61124 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.08■□□□□ 0.32
Cln3Q61124 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Cln3Q61124 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cln3Q61124 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cln3Q61124 Nudt18-203ENSMUST00000228768 1578 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms