Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.23□□□□□ -0.13
Usf1Q61069 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Usf1Q61069 Gm7774-201ENSMUST00000200064 533 ntBASIC14.23□□□□□ -0.13
Usf1Q61069 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.23□□□□□ -0.13
Usf1Q61069 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.23□□□□□ -0.13
Usf1Q61069 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.23□□□□□ -0.13
Usf1Q61069 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.23□□□□□ -0.13
Usf1Q61069 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usf1Q61069 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Usf1Q61069 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.22□□□□□ -0.13
Usf1Q61069 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC14.22□□□□□ -0.13
Usf1Q61069 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.22□□□□□ -0.13
Usf1Q61069 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.22□□□□□ -0.13
Usf1Q61069 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.22□□□□□ -0.13
Usf1Q61069 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Usf1Q61069 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.22□□□□□ -0.13
Usf1Q61069 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC14.22□□□□□ -0.13
Usf1Q61069 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Usf1Q61069 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.22□□□□□ -0.13
Usf1Q61069 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usf1Q61069 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Usf1Q61069 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC14.21□□□□□ -0.13
Usf1Q61069 Rpph1-201ENSMUST00000175096 319 ntBASIC14.21□□□□□ -0.13
Usf1Q61069 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.21□□□□□ -0.13
Usf1Q61069 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Usf1Q61069 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usf1Q61069 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC14.21□□□□□ -0.13
Usf1Q61069 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.21□□□□□ -0.13
Usf1Q61069 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usf1Q61069 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usf1Q61069 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usf1Q61069 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usf1Q61069 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 AC121598.2-201ENSMUST00000228376 2325 ntBASIC14.2□□□□□ -0.14
Usf1Q61069 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Usf1Q61069 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usf1Q61069 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usf1Q61069 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.2□□□□□ -0.14
Usf1Q61069 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Gm10253-201ENSMUST00000194270 940 ntBASIC14.2□□□□□ -0.14
Usf1Q61069 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usf1Q61069 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.2□□□□□ -0.14
Usf1Q61069 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usf1Q61069 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.2□□□□□ -0.14
Usf1Q61069 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms