Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Upf3bQ3ULL6 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3bQ3ULL6 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3bQ3ULL6 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3bQ3ULL6 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Upf3bQ3ULL6 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms