Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC19.83■□□□□ 0.77
Ddb1Q3U1J4 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddb1Q3U1J4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Ddb1Q3U1J4 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Gm2810-201ENSMUST00000118681 990 ntBASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Gm9824-201ENSMUST00000178707 561 ntBASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Gm6888-201ENSMUST00000221983 706 ntBASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddb1Q3U1J4 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Gm18737-201ENSMUST00000173594 937 ntBASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Gm10499-201ENSMUST00000174094 934 ntBASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Gm7730-201ENSMUST00000212486 454 ntBASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddb1Q3U1J4 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Gm8410-201ENSMUST00000117225 605 ntBASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Ddb1Q3U1J4 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddb1Q3U1J4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms