Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Gm27389-201ENSMUST00000183622 195 ntBASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Gm5587-201ENSMUST00000206270 674 ntBASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Col28a1Q2UY11 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Gm7370-201ENSMUST00000219471 767 ntBASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Gm7461-201ENSMUST00000058918 827 ntBASIC15.23■□□□□ 0.03
Col28a1Q2UY11 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col28a1Q2UY11 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col28a1Q2UY11 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 9.8 ms