Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC17.26■□□□□ 0.35
Col6a1Q04857 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm8825-201ENSMUST00000182565 998 ntBASIC17.26■□□□□ 0.35
Col6a1Q04857 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.26■□□□□ 0.35
Col6a1Q04857 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm45612-201ENSMUST00000211320 160 ntBASIC17.26■□□□□ 0.35
Col6a1Q04857 Arhgef33-209ENSMUST00000225223 714 ntBASIC17.26■□□□□ 0.35
Col6a1Q04857 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.26■□□□□ 0.35
Col6a1Q04857 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a1Q04857 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col6a1Q04857 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Col6a1Q04857 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC17.25■□□□□ 0.35
Col6a1Q04857 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Gm36967-201ENSMUST00000193814 266 ntBASIC17.25■□□□□ 0.35
Col6a1Q04857 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Col6a1Q04857 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a1Q04857 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm44335-201ENSMUST00000196879 141 ntBASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm44297-201ENSMUST00000198304 141 ntBASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Gm44346-201ENSMUST00000198851 141 ntBASIC17.24■□□□□ 0.35
Col6a1Q04857 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.24■□□□□ 0.35
Col6a1Q04857 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a1Q04857 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.24■□□□□ 0.35
Col6a1Q04857 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Mir6404-201ENSMUST00000183699 94 ntBASIC17.23■□□□□ 0.35
Col6a1Q04857 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.23■□□□□ 0.35
Col6a1Q04857 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a1Q04857 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC17.23■□□□□ 0.35
Col6a1Q04857 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms