Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.63■□□□□ 0.41
Col2a1P28481 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Col2a1P28481 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col2a1P28481 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.63■□□□□ 0.41
Col2a1P28481 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.63■□□□□ 0.41
Col2a1P28481 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Col2a1P28481 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Col2a1P28481 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
Col2a1P28481 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.62■□□□□ 0.41
Col2a1P28481 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.62■□□□□ 0.41
Col2a1P28481 Gm13616-201ENSMUST00000120600 222 ntBASIC17.62■□□□□ 0.41
Col2a1P28481 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col2a1P28481 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.62■□□□□ 0.41
Col2a1P28481 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.62■□□□□ 0.41
Col2a1P28481 Auts2-212ENSMUST00000178555 309 ntBASIC17.62■□□□□ 0.41
Col2a1P28481 Gm18057-201ENSMUST00000208220 503 ntBASIC17.62■□□□□ 0.41
Col2a1P28481 CT010506.4-201ENSMUST00000225457 351 ntBASIC17.62■□□□□ 0.41
Col2a1P28481 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Col2a1P28481 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.61■□□□□ 0.41
Col2a1P28481 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.61■□□□□ 0.41
Col2a1P28481 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.61■□□□□ 0.41
Col2a1P28481 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
Col2a1P28481 Gm16026-204ENSMUST00000162652 683 ntBASIC17.61■□□□□ 0.41
Col2a1P28481 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col2a1P28481 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Col2a1P28481 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col2a1P28481 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Col2a1P28481 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col2a1P28481 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Col2a1P28481 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.6■□□□□ 0.41
Col2a1P28481 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Col2a1P28481 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC17.6■□□□□ 0.41
Col2a1P28481 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.6■□□□□ 0.41
Col2a1P28481 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Col2a1P28481 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.6■□□□□ 0.41
Col2a1P28481 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17.6■□□□□ 0.41
Col2a1P28481 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col2a1P28481 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Col2a1P28481 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
Col2a1P28481 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 AC166341.4-201ENSMUST00000220625 123 ntBASIC17.59■□□□□ 0.41
Col2a1P28481 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.59■□□□□ 0.41
Col2a1P28481 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Col2a1P28481 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col2a1P28481 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Col2a1P28481 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms