Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Gm2011-201ENSMUST00000203124 1263 ntBASIC12.9□□□□□ -0.34
Sdc1P18828 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC12.9□□□□□ -0.34
Sdc1P18828 Gm18025-201ENSMUST00000221733 862 ntBASIC12.9□□□□□ -0.34
Sdc1P18828 Rab3c-203ENSMUST00000224180 967 ntBASIC12.9□□□□□ -0.34
Sdc1P18828 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC12.9□□□□□ -0.34
Sdc1P18828 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Sdc1P18828 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 AC148324.1-201ENSMUST00000219034 4240 ntBASIC12.9□□□□□ -0.34
Sdc1P18828 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sdc1P18828 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sdc1P18828 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sdc1P18828 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Sdc1P18828 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Sdc1P18828 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Sdc1P18828 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Sdc1P18828 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Gm4968-201ENSMUST00000071458 858 ntBASIC12.89□□□□□ -0.35
Sdc1P18828 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Sdc1P18828 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Gm6190-201ENSMUST00000220683 1374 ntBASIC12.89□□□□□ -0.35
Sdc1P18828 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sdc1P18828 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Sdc1P18828 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Sdc1P18828 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Sdc1P18828 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
Sdc1P18828 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Sdc1P18828 Gm12382-201ENSMUST00000122005 922 ntBASIC12.88□□□□□ -0.35
Sdc1P18828 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Gm36967-201ENSMUST00000193814 266 ntBASIC12.88□□□□□ -0.35
Sdc1P18828 Gm42545-201ENSMUST00000202755 922 ntBASIC12.88□□□□□ -0.35
Sdc1P18828 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
Sdc1P18828 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Sdc1P18828 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
Sdc1P18828 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Sdc1P18828 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sdc1P18828 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC12.88□□□□□ -0.35
Sdc1P18828 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
Sdc1P18828 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Sdc1P18828 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.87□□□□□ -0.35
Sdc1P18828 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sdc1P18828 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms