Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm6858-201ENSMUST00000208582 1468 ntBASIC14.86□□□□□ -0.03
Msx1P13297 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.86□□□□□ -0.03
Msx1P13297 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Msx1P13297 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
Msx1P13297 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.86□□□□□ -0.03
Msx1P13297 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msx1P13297 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Msx1P13297 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.85□□□□□ -0.03
Msx1P13297 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Msx1P13297 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Msx1P13297 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC14.85□□□□□ -0.03
Msx1P13297 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.85□□□□□ -0.03
Msx1P13297 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.85□□□□□ -0.03
Msx1P13297 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msx1P13297 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14.84□□□□□ -0.03
Msx1P13297 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Gm9727-201ENSMUST00000161387 555 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.84□□□□□ -0.03
Msx1P13297 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.84□□□□□ -0.03
Msx1P13297 Gm6550-201ENSMUST00000187574 993 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.84□□□□□ -0.03
Msx1P13297 Gm44044-201ENSMUST00000205178 1089 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Gm7506-201ENSMUST00000207758 815 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.84□□□□□ -0.03
Msx1P13297 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.84□□□□□ -0.03
Msx1P13297 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.84□□□□□ -0.03
Msx1P13297 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Msx1P13297 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Gm37744-201ENSMUST00000194616 1590 ntBASIC14.84□□□□□ -0.03
Msx1P13297 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.84□□□□□ -0.03
Msx1P13297 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msx1P13297 Gm45251-201ENSMUST00000209486 1465 ntBASIC14.83□□□□□ -0.03
Msx1P13297 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msx1P13297 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC14.83□□□□□ -0.04
Msx1P13297 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.83□□□□□ -0.04
Msx1P13297 Gm38116-201ENSMUST00000193873 1533 ntBASIC14.83□□□□□ -0.04
Msx1P13297 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.83□□□□□ -0.04
Msx1P13297 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Gm4995-201ENSMUST00000117247 432 ntBASIC14.83□□□□□ -0.04
Msx1P13297 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
Msx1P13297 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.83□□□□□ -0.04
Msx1P13297 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Msx1P13297 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msx1P13297 Gm37319-201ENSMUST00000193500 636 ntBASIC14.83□□□□□ -0.04
Msx1P13297 Gm6089-201ENSMUST00000197666 938 ntBASIC14.83□□□□□ -0.04
Msx1P13297 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.83□□□□□ -0.04
Msx1P13297 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms