Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.02□□□□□ -0.32
Hmgb3O54879 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Hmgb3O54879 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC13.02□□□□□ -0.33
Hmgb3O54879 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Hmgb3O54879 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb3O54879 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC13.01□□□□□ -0.33
Hmgb3O54879 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC13.01□□□□□ -0.33
Hmgb3O54879 AC120002.2-201ENSMUST00000220205 773 ntBASIC13.01□□□□□ -0.33
Hmgb3O54879 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb3O54879 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.01□□□□□ -0.33
Hmgb3O54879 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb3O54879 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hmgb3O54879 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC13□□□□□ -0.33
Hmgb3O54879 AC124581.1-201ENSMUST00000225416 1399 ntBASIC13□□□□□ -0.33
Hmgb3O54879 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC13□□□□□ -0.33
Hmgb3O54879 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC13□□□□□ -0.33
Hmgb3O54879 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Gm16425-201ENSMUST00000118143 3130 ntBASIC13□□□□□ -0.33
Hmgb3O54879 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Hmgb3O54879 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC13□□□□□ -0.33
Hmgb3O54879 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Gm44729-201ENSMUST00000206759 2052 ntBASIC13□□□□□ -0.33
Hmgb3O54879 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb3O54879 AC163637.1-201ENSMUST00000215491 1894 ntBASIC12.99□□□□□ -0.33
Hmgb3O54879 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hmgb3O54879 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Hmgb3O54879 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms