Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 AC140930.3-201ENSMUST00000222935 274 ntBASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smco4Q9JIS3 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.66□□□□□ -0.38
Smco4Q9JIS3 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 CT010444.2-201ENSMUST00000217877 1629 ntBASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Smco4Q9JIS3 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms