Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 AC130669.1-201ENSMUST00000228537 1672 ntBASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Cpsf1Q9EPU4 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Gm45612-201ENSMUST00000211320 160 ntBASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
Cpsf1Q9EPU4 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 AC124549.3-201ENSMUST00000225541 367 ntBASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 App-207ENSMUST00000227737 2827 ntBASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cpsf1Q9EPU4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Thap2-203ENSMUST00000218989 527 ntBASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 AC093043.3-201ENSMUST00000226531 2273 ntBASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cpsf1Q9EPU4 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Cpsf1Q9EPU4 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Hivep3-201ENSMUST00000084306 2973 ntBASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Gm12892-201ENSMUST00000117367 1146 ntBASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC21.46■■□□□ 1.03
Cpsf1Q9EPU4 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Cpsf1Q9EPU4 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Gm44492-201ENSMUST00000197012 141 ntBASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cpsf1Q9EPU4 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms