Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ccdc43Q9CR29 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccdc43Q9CR29 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Prob1-201ENSMUST00000097619 3021 ntBASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Ccdc43Q9CR29 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ccdc43Q9CR29 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Ccdc43Q9CR29 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ccdc43Q9CR29 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms