Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm44367-201ENSMUST00000196836 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44350-201ENSMUST00000197197 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44390-201ENSMUST00000197533 144 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44313-201ENSMUST00000198018 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44486-201ENSMUST00000198508 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44454-201ENSMUST00000198541 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44314-201ENSMUST00000199263 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44394-201ENSMUST00000199558 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44484-201ENSMUST00000199873 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44466-201ENSMUST00000200264 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gm44359-201ENSMUST00000200671 138 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Ushbp1Q8R370 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ushbp1Q8R370 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Gm8000-201ENSMUST00000188378 592 ntBASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ushbp1Q8R370 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Gm15165-201ENSMUST00000118140 502 ntBASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ushbp1Q8R370 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms