Protein–RNA interactions for Protein: Q8CDG3

Vcpip1, Deubiquitinating protein VCIP135, mousemouse

Predictions only

Length 1,220 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcpip1Q8CDG3 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Mir6404-201ENSMUST00000183699 94 ntBASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Vcpip1Q8CDG3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Vcpip1Q8CDG3 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Vcpip1Q8CDG3 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Vcpip1Q8CDG3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Gm11950-201ENSMUST00000121615 838 ntBASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Gm27704-201ENSMUST00000185094 107 ntBASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Gm45328-201ENSMUST00000210942 917 ntBASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Vcpip1Q8CDG3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Vcpip1Q8CDG3 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Vcpip1Q8CDG3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Vcpip1Q8CDG3 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms