Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
Trim28Q62318 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Mir7036b-201ENSMUST00000184791 63 ntBASIC20.31■□□□□ 0.84
Trim28Q62318 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC20.31■□□□□ 0.84
Trim28Q62318 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Trim28Q62318 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Trim28Q62318 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim28Q62318 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim28Q62318 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim28Q62318 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim28Q62318 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trim28Q62318 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Gm15427-201ENSMUST00000117288 531 ntBASIC20.3■□□□□ 0.84
Trim28Q62318 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC20.3■□□□□ 0.84
Trim28Q62318 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim28Q62318 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Trim28Q62318 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Trim28Q62318 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim28Q62318 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Trim28Q62318 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Trim28Q62318 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC20.29■□□□□ 0.84
Trim28Q62318 Gm12008-201ENSMUST00000117791 755 ntBASIC20.29■□□□□ 0.84
Trim28Q62318 Gm20553-201ENSMUST00000204205 844 ntBASIC20.29■□□□□ 0.84
Trim28Q62318 Gm45612-201ENSMUST00000211320 160 ntBASIC20.29■□□□□ 0.84
Trim28Q62318 Thap2-203ENSMUST00000218989 527 ntBASIC20.29■□□□□ 0.84
Trim28Q62318 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Gm45293-201ENSMUST00000209754 1812 ntBASIC20.29■□□□□ 0.84
Trim28Q62318 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
Trim28Q62318 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim28Q62318 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim28Q62318 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim28Q62318 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim28Q62318 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim28Q62318 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim28Q62318 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
Trim28Q62318 Gm27301-201ENSMUST00000184012 127 ntBASIC20.28■□□□□ 0.84
Trim28Q62318 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim28Q62318 AC025913.2-201ENSMUST00000220136 1766 ntBASIC20.28■□□□□ 0.84
Trim28Q62318 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
Trim28Q62318 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Trim28Q62318 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim28Q62318 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim28Q62318 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim28Q62318 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim28Q62318 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim28Q62318 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim28Q62318 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim28Q62318 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms