Protein–RNA interactions for Protein: Q61466

Smarcd1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, mousemouse

Known RBP Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd1Q61466 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smarcd1Q61466 Gm19430-201ENSMUST00000193847 2137 ntBASIC16.34■□□□□ 0.21
Smarcd1Q61466 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.34■□□□□ 0.21
Smarcd1Q61466 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Smarcd1Q61466 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Smarcd1Q61466 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Smarcd1Q61466 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Smarcd1Q61466 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Smarcd1Q61466 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.33■□□□□ 0.2
Smarcd1Q61466 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Gm1401-201ENSMUST00000122048 772 ntBASIC16.33■□□□□ 0.2
Smarcd1Q61466 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Gm37153-201ENSMUST00000193637 231 ntBASIC16.33■□□□□ 0.2
Smarcd1Q61466 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.33■□□□□ 0.2
Smarcd1Q61466 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smarcd1Q61466 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.32■□□□□ 0.2
Smarcd1Q61466 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Gm43514-201ENSMUST00000198852 424 ntBASIC16.32■□□□□ 0.2
Smarcd1Q61466 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Gm18206-201ENSMUST00000207027 926 ntBASIC16.32■□□□□ 0.2
Smarcd1Q61466 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.32■□□□□ 0.2
Smarcd1Q61466 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smarcd1Q61466 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.31■□□□□ 0.2
Smarcd1Q61466 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 AW822252-206ENSMUST00000208904 237 ntBASIC16.31■□□□□ 0.2
Smarcd1Q61466 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.31■□□□□ 0.2
Smarcd1Q61466 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.31■□□□□ 0.2
Smarcd1Q61466 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smarcd1Q61466 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms