Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Trav3-1Q5R1I8 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 Gm37861-201ENSMUST00000193534 2869 ntBASIC10.63□□□□□ -0.71
Trav3-1Q5R1I8 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Trav3-1Q5R1I8 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms