Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Upf3aQ3ULJ3 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Gm45244-201ENSMUST00000211328 2200 ntBASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Upf3aQ3ULJ3 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3aQ3ULJ3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3aQ3ULJ3 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.46■□□□□ 0.22
Upf3aQ3ULJ3 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3aQ3ULJ3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Gm18246-201ENSMUST00000221023 728 ntBASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3aQ3ULJ3 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Gm6226-201ENSMUST00000117765 1146 ntBASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Gm13365-201ENSMUST00000121188 973 ntBASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Thap2-203ENSMUST00000218989 527 ntBASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3aQ3ULJ3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms