Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.46■□□□□ 0.55
Limch1Q3UH68 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.46■□□□□ 0.55
Limch1Q3UH68 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.46■□□□□ 0.55
Limch1Q3UH68 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Limch1Q3UH68 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.46■□□□□ 0.54
Limch1Q3UH68 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
Limch1Q3UH68 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Gm1818-201ENSMUST00000169406 1184 ntBASIC18.45■□□□□ 0.54
Limch1Q3UH68 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC18.45■□□□□ 0.54
Limch1Q3UH68 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Limch1Q3UH68 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.44■□□□□ 0.54
Limch1Q3UH68 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Cmtm5-203ENSMUST00000227441 610 ntBASIC18.44■□□□□ 0.54
Limch1Q3UH68 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Limch1Q3UH68 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Gm18206-201ENSMUST00000207027 926 ntBASIC18.43■□□□□ 0.54
Limch1Q3UH68 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.43■□□□□ 0.54
Limch1Q3UH68 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.42■□□□□ 0.54
Limch1Q3UH68 Gm6257-201ENSMUST00000163864 910 ntBASIC18.42■□□□□ 0.54
Limch1Q3UH68 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Gm2651-201ENSMUST00000203560 838 ntBASIC18.42■□□□□ 0.54
Limch1Q3UH68 AC160338.1-201ENSMUST00000214232 705 ntBASIC18.42■□□□□ 0.54
Limch1Q3UH68 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
Limch1Q3UH68 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms