Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col28a1Q2UY11 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 BC037039-201ENSMUST00000192003 2205 ntBASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col28a1Q2UY11 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Gm27704-201ENSMUST00000185094 107 ntBASIC15.27■□□□□ 0.04
Col28a1Q2UY11 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Col28a1Q2UY11 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col28a1Q2UY11 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm13474-201ENSMUST00000122466 815 ntBASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm21559-201ENSMUST00000220638 855 ntBASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Gm8587-201ENSMUST00000076538 843 ntBASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col28a1Q2UY11 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Gm18421-201ENSMUST00000204122 625 ntBASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col28a1Q2UY11 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms