Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Nkx3-1P97436 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.55□□□□□ -0.24
Nkx3-1P97436 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.55□□□□□ -0.24
Nkx3-1P97436 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.55□□□□□ -0.24
Nkx3-1P97436 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC13.55□□□□□ -0.24
Nkx3-1P97436 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC13.54□□□□□ -0.24
Nkx3-1P97436 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Gm27300-201ENSMUST00000184085 97 ntBASIC13.54□□□□□ -0.24
Nkx3-1P97436 Gm27335-201ENSMUST00000184758 97 ntBASIC13.54□□□□□ -0.24
Nkx3-1P97436 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx3-1P97436 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.53□□□□□ -0.24
Nkx3-1P97436 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.53□□□□□ -0.24
Nkx3-1P97436 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.53□□□□□ -0.24
Nkx3-1P97436 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13.53□□□□□ -0.24
Nkx3-1P97436 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx3-1P97436 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.52□□□□□ -0.24
Nkx3-1P97436 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC13.52□□□□□ -0.24
Nkx3-1P97436 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Nkx3-1P97436 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC13.52□□□□□ -0.24
Nkx3-1P97436 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Nkx3-1P97436 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Nkx3-1P97436 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms