Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC12.73□□□□□ -0.37
Cdx1P18111 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Gm10517-202ENSMUST00000192970 758 ntBASIC12.73□□□□□ -0.37
Cdx1P18111 Gm45058-201ENSMUST00000205810 766 ntBASIC12.73□□□□□ -0.37
Cdx1P18111 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cdx1P18111 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cdx1P18111 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Cdx1P18111 Gm43272-201ENSMUST00000200599 1584 ntBASIC12.73□□□□□ -0.37
Cdx1P18111 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cdx1P18111 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Cdx1P18111 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Cdx1P18111 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdx1P18111 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Gm10013-201ENSMUST00000106074 672 ntBASIC12.72□□□□□ -0.37
Cdx1P18111 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC12.72□□□□□ -0.37
Cdx1P18111 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Cdx1P18111 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC12.72□□□□□ -0.37
Cdx1P18111 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cdx1P18111 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Cdx1P18111 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Cdx1P18111 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Cdx1P18111 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
Cdx1P18111 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC12.71□□□□□ -0.37
Cdx1P18111 Gm2274-201ENSMUST00000184539 609 ntBASIC12.71□□□□□ -0.37
Cdx1P18111 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Cdx1P18111 Gm38027-201ENSMUST00000192315 235 ntBASIC12.71□□□□□ -0.37
Cdx1P18111 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC12.71□□□□□ -0.37
Cdx1P18111 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC12.71□□□□□ -0.37
Cdx1P18111 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Cdx1P18111 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC12.71□□□□□ -0.38
Cdx1P18111 Gm10605-202ENSMUST00000183019 3198 ntBASIC12.71□□□□□ -0.38
Cdx1P18111 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
Cdx1P18111 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Cdx1P18111 Gm37728-201ENSMUST00000195025 2292 ntBASIC12.71□□□□□ -0.38
Cdx1P18111 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Cdx1P18111 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms