Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Lmx1bO88609 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Mir5126-201ENSMUST00000175513 77 ntBASIC14.22□□□□□ -0.13
Lmx1bO88609 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.22□□□□□ -0.13
Lmx1bO88609 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
Lmx1bO88609 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.22□□□□□ -0.13
Lmx1bO88609 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Lmx1bO88609 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Lmx1bO88609 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.21□□□□□ -0.13
Lmx1bO88609 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.21□□□□□ -0.13
Lmx1bO88609 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Gm6089-201ENSMUST00000197666 938 ntBASIC14.21□□□□□ -0.13
Lmx1bO88609 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Gm15590-201ENSMUST00000078419 552 ntBASIC14.21□□□□□ -0.13
Lmx1bO88609 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Lmx1bO88609 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lmx1bO88609 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.14
Lmx1bO88609 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.21□□□□□ -0.14
Lmx1bO88609 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Lmx1bO88609 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.21□□□□□ -0.14
Lmx1bO88609 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lmx1bO88609 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lmx1bO88609 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.2□□□□□ -0.14
Lmx1bO88609 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Gm5364-201ENSMUST00000216789 889 ntBASIC14.2□□□□□ -0.14
Lmx1bO88609 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.2□□□□□ -0.14
Lmx1bO88609 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lmx1bO88609 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Lmx1bO88609 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Lmx1bO88609 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.19□□□□□ -0.14
Lmx1bO88609 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.19□□□□□ -0.14
Lmx1bO88609 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.19□□□□□ -0.14
Lmx1bO88609 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.19□□□□□ -0.14
Lmx1bO88609 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.19□□□□□ -0.14
Lmx1bO88609 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms