Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hmgb3O54879 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Hmgb3O54879 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Hmgb3O54879 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC13.05□□□□□ -0.32
Hmgb3O54879 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Hmgb3O54879 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hmgb3O54879 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.04□□□□□ -0.32
Hmgb3O54879 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Hmgb3O54879 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.04□□□□□ -0.32
Hmgb3O54879 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Hmgb3O54879 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC13.03□□□□□ -0.32
Hmgb3O54879 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Hmgb3O54879 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Gm7638-201ENSMUST00000121348 967 ntBASIC13.03□□□□□ -0.32
Hmgb3O54879 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC13.03□□□□□ -0.32
Hmgb3O54879 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Hmgb3O54879 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC13.03□□□□□ -0.32
Hmgb3O54879 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Hmgb3O54879 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms