Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Prpf40aQ9R1C7 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.33■□□□□ 0.36
Prpf40aQ9R1C7 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Prpf40aQ9R1C7 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Gm15372-201ENSMUST00000120729 834 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Gm44454-201ENSMUST00000198541 138 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Prpf40aQ9R1C7 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Mir6404-201ENSMUST00000183699 94 ntBASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Prob1-201ENSMUST00000097619 3021 ntBASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Prpf40aQ9R1C7 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Prpf40aQ9R1C7 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms