Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.92■□□□□ 0.3
Cpsf3Q9QXK7 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Cpsf3Q9QXK7 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cpsf3Q9QXK7 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cpsf3Q9QXK7 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Cpsf3Q9QXK7 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cpsf3Q9QXK7 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cpsf3Q9QXK7 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Mir5131-201ENSMUST00000175426 93 ntBASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.89■□□□□ 0.29
Cpsf3Q9QXK7 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Gm15173-201ENSMUST00000122049 433 ntBASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.88■□□□□ 0.29
Cpsf3Q9QXK7 Gm2651-201ENSMUST00000203560 838 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms