Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Smco4Q9JIS3 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Smco4Q9JIS3 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Ap5m1-205ENSMUST00000227431 3757 ntBASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Smco4Q9JIS3 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smco4Q9JIS3 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Smco4Q9JIS3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms