Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Gm14722-201ENSMUST00000118943 689 ntBASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Gm9682-201ENSMUST00000197505 556 ntBASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3bQ9ES34 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Grk6-207ENSMUST00000225925 2769 ntBASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Gm4899-201ENSMUST00000178708 719 ntBASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3bQ9ES34 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Ube3bQ9ES34 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3bQ9ES34 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ube3bQ9ES34 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms