Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim11Q99PQ2 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim11Q99PQ2 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim11Q99PQ2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim11Q99PQ2 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Rprl3-201ENSMUST00000157400 290 ntBASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim11Q99PQ2 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Gm27742-201ENSMUST00000184667 60 ntBASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Asic1-205ENSMUST00000228185 1818 ntBASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim11Q99PQ2 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Mir3081-201ENSMUST00000175305 84 ntBASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim11Q99PQ2 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim11Q99PQ2 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms