Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdk5rap3Q99LM2 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.21
Cdk5rap3Q99LM2 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdk5rap3Q99LM2 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdk5rap3Q99LM2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdk5rap3Q99LM2 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Mir6982-201ENSMUST00000184354 68 ntBASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdk5rap3Q99LM2 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Gm10252-201ENSMUST00000209541 832 ntBASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Cdk5rap3Q99LM2 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdk5rap3Q99LM2 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.3■□□□□ 0.2
Cdk5rap3Q99LM2 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms