Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trim47Q8C0E3 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Gm8344-201ENSMUST00000119813 856 ntBASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Gm5682-201ENSMUST00000173402 505 ntBASIC17.42■□□□□ 0.38
Trim47Q8C0E3 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim47Q8C0E3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Gm15358-201ENSMUST00000119249 520 ntBASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Gm6443-201ENSMUST00000203599 874 ntBASIC17.41■□□□□ 0.38
Trim47Q8C0E3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 AV026068-213ENSMUST00000223675 1171 ntBASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trim47Q8C0E3 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Gm1401-201ENSMUST00000122048 772 ntBASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim47Q8C0E3 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trim47Q8C0E3 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gm19164-201ENSMUST00000210667 640 ntBASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim47Q8C0E3 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms