Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Gm7669-201ENSMUST00000210184 1603 ntBASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Usp40Q8BWR4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Gm5184-201ENSMUST00000220417 1702 ntBASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Gm5177-201ENSMUST00000183092 997 ntBASIC21.52■■□□□ 1.04
Usp40Q8BWR4 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Usp40Q8BWR4 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Usp40Q8BWR4 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Usp40Q8BWR4 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Gm12892-201ENSMUST00000117367 1146 ntBASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Usp40Q8BWR4 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Gm13337-201ENSMUST00000119183 1594 ntBASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Mir7036b-201ENSMUST00000184791 63 ntBASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Gm18246-201ENSMUST00000221023 728 ntBASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Usp40Q8BWR4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Usp40Q8BWR4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Gm8318-201ENSMUST00000182954 872 ntBASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Usp40Q8BWR4 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Usp40Q8BWR4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Usp40Q8BWR4 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Usp40Q8BWR4 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Usp40Q8BWR4 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Usp40Q8BWR4 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms