Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Gm7774-201ENSMUST00000200064 533 ntBASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Gm18057-201ENSMUST00000208220 503 ntBASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Ddx55Q6ZPL9 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ddx55Q6ZPL9 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.83■□□□□ 0.45
Ddx55Q6ZPL9 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx55Q6ZPL9 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx55Q6ZPL9 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx55Q6ZPL9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ddx55Q6ZPL9 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Gm27622-201ENSMUST00000183779 60 ntBASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Gm10253-201ENSMUST00000194270 940 ntBASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Rbfox2-206ENSMUST00000227314 1810 ntBASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ddx55Q6ZPL9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Gm6018-201ENSMUST00000216090 1306 ntBASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Gm2272-201ENSMUST00000194903 582 ntBASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Ddx55Q6ZPL9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms