Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.64■□□□□ 0.41
Usp49Q6P9L4 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp49Q6P9L4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Gm12895-201ENSMUST00000122214 226 ntBASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Asic1-205ENSMUST00000228185 1818 ntBASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp49Q6P9L4 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm8825-201ENSMUST00000182565 998 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm4518-201ENSMUST00000182638 718 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm17807-201ENSMUST00000186869 298 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp49Q6P9L4 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp49Q6P9L4 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms