Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim27Q62158 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim27Q62158 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim27Q62158 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim27Q62158 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim27Q62158 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Gm9103-201ENSMUST00000119371 405 ntBASIC19.33■□□□□ 0.68
Trim27Q62158 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.33■□□□□ 0.68
Trim27Q62158 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
Trim27Q62158 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Trim27Q62158 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim27Q62158 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.33■□□□□ 0.68
Trim27Q62158 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Trim27Q62158 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Gm13337-201ENSMUST00000119183 1594 ntBASIC19.32■□□□□ 0.68
Trim27Q62158 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim27Q62158 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim27Q62158 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim27Q62158 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim27Q62158 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Trim27Q62158 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Trim27Q62158 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Gm8097-201ENSMUST00000117903 829 ntBASIC19.31■□□□□ 0.68
Trim27Q62158 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trim27Q62158 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Gm34391-201ENSMUST00000203706 907 ntBASIC19.31■□□□□ 0.68
Trim27Q62158 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Trim27Q62158 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.31■□□□□ 0.68
Trim27Q62158 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trim27Q62158 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Trim27Q62158 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim27Q62158 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim27Q62158 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Trim27Q62158 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim27Q62158 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC19.3■□□□□ 0.68
Trim27Q62158 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim27Q62158 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Trim27Q62158 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim27Q62158 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim27Q62158 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
Trim27Q62158 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trim27Q62158 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Trim27Q62158 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim27Q62158 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim27Q62158 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms